Journal: eLife

Article Title: LKB1 coordinates neurite remodeling to drive synapse layer emergence in the outer retina

doi: 10.7554/eLife.56931

Figure Lengend Snippet: Antibodies used in LKB1 mutant tissue analysis. Antibodies were utilized that label individual neuron populations and synapses in the outer retina.

Article Snippet: Calbindin D-28k , Full-length recombinant human Calbindin D-28K , Horizontal cells; amacrine cells; retinal ganglion cells , Novus biologicals; chicken polyclonal; NBP2-50028; no RRID , 1:2000.

Techniques: Mutagenesis, Labeling, Concentration Assay, Recombinant, Derivative Assay, Purification

Journal: Frontiers in Neural Circuits

Article Title: Spatial distribution of D1R- and D2R-expressing medium-sized spiny neurons differs along the rostro-caudal axis of the mouse dorsal striatum

doi: 10.3389/fncir.2013.00124

Figure Lengend Snippet: Striatal interneurons distribution in the D2R/A2aR-expressing MSNs-poor zone of the caudal striatum . Striatal sections at the caudal level from Drd2-EGFP mice ( n = 5 for each staining) labeled with antibodies for choline acetyltransferase (ChAT, A ), parvalbumin (ParV, B ), neuropeptide Y (NPY, C ) and calretinin (CalR, D ). Scale bars, 200 μm. Insets, higher magnification (GFP, green, A 1 ; ChAT, magenta, A 2 ; merge, A 3 ), (GFP, green, B 1 ; ParV, magenta, B 2 ; merge, B 3 ), (GFP, green, C 1 ; NPY, magenta, C 2 ; merge C 3 ) and (GFP, green, D 1 ; CalR, magenta, D 2 ; merge D 3 ). Scale bars, 100 μm. DStr, dorsal striatum; GPe, external globus pallidus, GFP, green fluorescent protein.

Article Snippet: Finally, they were incubated overnight or 72 h at 4°C with the primary antibodies: chicken and rabbit anti-GFP (1:500 and 1:1000 respectively, Invitrogen), rabbit anti-vesicular glutamate transporter 1 (VGluT1) or anti-VGluT2 (1:1000 gift from S. El Mestikawy), mouse anti-tyrosine hydroxylase (TH) (1:1000, Millipore), rat anti-dopamine transporter (DAT) (1:1000, Millipore), mouse anti-NeuN (1:500, Millipore), mouse anti-D1R (1:500 gift from R. R. Luedtke), rabbit anti-Gα olf (1:500) (Hervé et al., ), rabbit anti-β-galactosidase (1:1000, Cappel, MP Biomedicals), guinea-pig anti-MOR (1:500 gift from T. Kaneko) mouse anti-DARPP-32 (1:1000 gift from P. Greengard), rabbit anti-calretinin (CalR), anti-calbindin-D28k and anti-parvalbumin (ParV) (1:1000, Swant), rabbit anti-neuropeptide Y (NPY) (1:400, Abcam), goat anti-ChAT (1:400, Millipore), rabbit anti-substance P (1:500, Millipore), rabbit anti-preproenkephalin (ppENK) (1:500, Neuromics) and rabbit anti-RFP (1:1000, MBL).

Techniques: Expressing, Staining, Labeling

Journal: PLOS Pathogens

Article Title: Deciphering infected cell types, hub gene networks and cell-cell communication in infectious bronchitis virus via single-cell RNA sequencing

doi: 10.1371/journal.ppat.1012232

Figure Lengend Snippet: (a) White arrows indicate the localization of IBV N protein in AQP2-expressing collecting duct cells. Green fluorescence shows positive staining for IBV N and red fluorescence shows staining for AQP2. (b) White arrows indicate the localization of IBV N protein in CALB1-expressing distal tubule cells. Red fluorescence shows positive staining for IBV N and green fluorescence shows staining for CALB1. (c) Changes in cell communication numbers: The top network diagram shows cell clusters as nodes, with line thickness indicating changes in communication numbers. The lower heatmap details these changes, with rows representing signal-sending cells and columns indicating signal-receiving cells. The color scale reflects the inter-group differences in signal communication frequency between different cell types (number of communications in the infected group—number in control group). The bar plots at the top and right side represent the overall differences in the number of signals sent/received by specific cell clusters. (d) Changes in cell communication strength: Similar to (c), with the top network diagram displaying changes in communication strength (communication strength in the infected group—strength in the control group). In the lower heatmap, the color scale reflects the inter-group differences in signal communication strength between different cell types. The bar plots at the top and right side represent the overall differences in the strength of signals sent/received by specific cell clusters (infected group—control group). (e) Inter-group differences in the communication strength of specific signaling pathways (receptor-ligand pairs) across cell clusters. Rows represent signal pathways and columns correspond to cell clusters, with heatmap colors depicting the strength variation of signals (infect group vs. control group). Upper left triangles for signal sent and lower right triangles for signal received. The bar plot on the right side shows the overall difference in communication strength of these signaling pathways between the IBV-infected group and the control group.

Article Snippet: mouse mab calb1 , 1:200 , Boster Bio (BM0203).

Techniques: Expressing, Fluorescence, Staining, Infection, Control, Protein-Protein interactions

Journal: PLOS Pathogens

Article Title: Deciphering infected cell types, hub gene networks and cell-cell communication in infectious bronchitis virus via single-cell RNA sequencing

doi: 10.1371/journal.ppat.1012232

Figure Lengend Snippet: Antbodies and reagents used in present study.

Article Snippet: mouse mab calb1 , 1:200 , Boster Bio (BM0203).

Techniques: Blocking Assay, Immunofluorescence

Journal: Journal of Animal Science and Biotechnology

Article Title: Adjusting phosphate feeding regimen according to daily rhythm increases eggshell quality via enhancing medullary bone remodeling in laying hens

doi: 10.1186/s40104-023-00829-0

Figure Lengend Snippet: Diurnal rhythms of serum calcium and phosphorus levels and uterine protein expressions in 40-week-old Hy-Line Brown laying hens during the egg laying cycle. A ) Serum calcium ( n = 9 per group); B ) serum phosphorus ( n = 9 per group); C ) protein expression of TRPV6 and CaBP-D28k ( n = 4 per group). White and black bars represent the light and dark. Data are presented as the mean ± SEM. P < 0.05 by one-way ANOVA followed by Duncan's multiple range tests and the letters (a–d) indicate significant differences among all treatment groups ( P < 0.05). ACTB, β-actin; CaBP-D28k, Calbindin D‐28k; TRPV6, Transient receptor potential vanilloid 6

Article Snippet: Primary antibodies (rabbit) to type 2a sodium-phosphate co-transporter (NPt2a, catalogue no. A9460), type III sodium-dependent phosphate transporter 1 (PiT1, catalogue no. A4117), type III sodium-dependent phosphate transporter 2 (PiT2, catalogue no. A6739), transient receptor potential vanilloid 6 (TRPV6, catalogue no. A16128), and calbindin D‐28k (CaBP-D28k, catalogue no. A0802) were purchased from ABclonal Technology (Wuhan, Hubei, China).

Techniques: Expressing

Journal: Journal of Animal Science and Biotechnology

Article Title: Adjusting phosphate feeding regimen according to daily rhythm increases eggshell quality via enhancing medullary bone remodeling in laying hens

doi: 10.1186/s40104-023-00829-0

Figure Lengend Snippet: Daily dynamic phosphorus feeding regimen increased uterine calcium transportation and eggshell quality in 70-week-old Hy-Line Brown laying hens for 12 weeks. A ) Eggshell thickness ( n = 62−66 per group); B ) eggshell strength ( n = 62−66 per group); C ) egg specific gravity ( n = 61−66 per group); D ) shell index ( n = 62−63 per group); D ) western blot analysis and statistical analysis of protein abundances of ACTB, TRPV6 and CaBP-D28k in the uterus collected from 18 h post-oviposition ( n = 3 per group), all samples were normalized to their respective ACTB levels of each sample. Data are presented as the mean ± SEM. P < 0.05 by one-way ANOVA followed by Duncan's multiple range tests and the letters (a−c) indicate significant differences among all treatment groups ( P < 0.05). RR, provided with regular phosphorus diet at both 09:00 and 17:00 for 12 weeks; RL, provided with regular phosphorus diet at 09:00 and low phosphorus diet at 17:00 for 12 weeks; LR, provided with low phosphorus diet at 09:00 and regular phosphorus diet at 17:00 for 12 weeks; LL, provided with low phosphorus diet at both 09:00 and 17:00 for 12 weeks. ACTB, β-actin; CaBP-D28k, Calbindin D‐28k; TRPV6, Transient receptor potential vanilloid 6

Article Snippet: Primary antibodies (rabbit) to type 2a sodium-phosphate co-transporter (NPt2a, catalogue no. A9460), type III sodium-dependent phosphate transporter 1 (PiT1, catalogue no. A4117), type III sodium-dependent phosphate transporter 2 (PiT2, catalogue no. A6739), transient receptor potential vanilloid 6 (TRPV6, catalogue no. A16128), and calbindin D‐28k (CaBP-D28k, catalogue no. A0802) were purchased from ABclonal Technology (Wuhan, Hubei, China).

Techniques: Western Blot

Journal: Frontiers in Neuroscience

Article Title: Dystrophin Is Required for the Proper Timing in Retinal Histogenesis: A Thorough Investigation on the mdx Mouse Model of Duchenne Muscular Dystrophy

doi: 10.3389/fnins.2020.00760

Figure Lengend Snippet: Primary antibodies used for immunofluorescence.

Article Snippet: Rabbit anti-calbindin (HC) , 1:1000 , Merck Millipore (Billerica, MA, United States).

Techniques: Immunofluorescence